Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PRAD | rs79411329 | chr5:154279698 | A/G | 0 | 494 | 30.08 | 35.57 | 4.87 | KM Plot |
| PRAD | rs7942689 | chr11:24220130 | T/C | 3.16E-8 | 492 | 30.8 | 32.17 | 20.93 | KM Plot |
| PRAD | rs79433953 | chr2:242639688 | C/G | 9.33E-5 | 480 | 30.53 | 32.23 | 29.63 | KM Plot |
| PRAD | rs7943636 | chr11:129971498 | C/T | 7.95E-7 | 492 | 30.93 | 32.22 | 29.17 | KM Plot |
| PRAD | rs79443596 | chr9:72829976 | G/T | 1.72E-5 | 494 | 30.8 | 31.35 | 22.45 | KM Plot |
| PRAD | rs7944503 | chr11:129966301 | A/T | 7.9E-7 | 493 | 30.87 | 32.22 | 29.17 | KM Plot |
| PRAD | rs7944796 | chr11:1653607 | A/G | 7.66E-5 | 490 | 24.42 | 29.2 | 31.63 | KM Plot |
| PRAD | rs7946849 | chr11:129971770 | C/T | 1.97E-6 | 493 | 30.93 | 32.22 | 22.8 | KM Plot |
| PRAD | rs79506905 | chr5:171530675 | G/A | 3.57E-7 | 490 | 30.87 | 32.13 | 13.17 | KM Plot |
| PRAD | rs79516895 | chr2:47152333 | G/A | 4.81E-6 | 490 | 30.78 | 35.57 | 36.93 | KM Plot |
| PRAD | rs79538453 | chr9:72871155 | C/A | 1.73E-5 | 493 | 30.8 | 31.35 | 22.45 | KM Plot |
| PRAD | rs79551211 | chr9:72834826 | C/T | 1.75E-5 | 493 | 30.8 | 31.35 | 22.45 | KM Plot |
| PRAD | rs79561057 | chr1:1157834 | C/T | 3.49E-9 | 490 | 31.27 | 30.73 | 13.73 | KM Plot |
| PRAD | rs79568327 | chr4:187812085 | C/T | 2.17E-6 | 480 | 31.18 | 28.57 | 26.8 | KM Plot |
| PRAD | rs79580550 | chr1:202783880 | C/A | 6.61E-6 | 489 | 30.97 | 31.7 | 37.17 | KM Plot |